STRINGSTRING
Bra006373 protein (Brassica rapa) - STRING interaction network
"Bra006373" - AT5G16840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006373AT5G16840 (E=8e-111) BPA1 | BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase (261 aa)    
Predicted Functional Partners:
Bra002620
AT5G58750 (E=1e-201) | wound-responsive protein-related (386 aa)
       
 
  0.948
Bra002626
AT2G40116 (E=1e-167) | phosphoinositide-specific phospholipase C family protein (580 aa)
       
 
  0.903
Bra038676
AT3G11730 (E=7e-109) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)
       
 
  0.794
Bra001418
AT3G11730 (E=3e-106) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)
       
 
  0.794
Bra013910
AT4G25680 (E=3e-117) | unknown protein (251 aa)
       
 
  0.782
Bra013908
AT4G25680 (E=4e-115) | unknown protein (245 aa)
       
 
  0.782
Bra010452
AT4G25680 (E=9e-128) | unknown protein (254 aa)
       
 
  0.782
Bra037472
AT5G48650 (E=1e-113) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (490 aa)
           
  0.445
Bra018407
AT2G29210 (E=3e-056) | splicing factor PWI domain-containing protein (844 aa)
           
  0.445
Bra040162
AT4G17530 (E=2e-108) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (274 aa)
       
 
  0.411
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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