STRINGSTRING
Bra006375 protein (Brassica rapa) - STRING interaction network
"Bra006375" - AT2G20790 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006375AT2G20790 (E=9e-280) | protein binding (613 aa)    
Predicted Functional Partners:
Bra000742
AT4G11360 (E=1e-058) RHA1B | RHA1B; protein binding / zinc ion binding (308 aa)
     
  0.978
Bra037603
AT5G22780 (E=0.0) | adaptin family protein (1014 aa)
     
  0.977
Bra002427
AT5G22780 (E=0.0) | adaptin family protein (1007 aa)
     
  0.977
Bra035228
AT4G11380 (E=0.0) | beta-adaptin, putative ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (899 aa)
     
  0.977
Bra019302
AT4G23460 (E=0.0) | beta-adaptin, putative ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (880 aa)
     
  0.977
Bra006100
AT5G11490 (E=0.0) | adaptin family protein ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (840 aa)
     
  0.977
Bra031528
AT1G60070 (E=9e-057) | binding / clathrin binding / protein binding / protein transporter (218 aa)
     
  0.976
Bra024739
AT1G31730 (E=1e-100) | epsilon-adaptin, putative (263 aa)
     
  0.976
Bra024627
AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (872 aa)
     
  0.976
Bra023199
AT1G31730 (E=0.0) | epsilon-adaptin, putative (938 aa)
     
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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