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Bra006376 protein (Brassica rapa) - STRING interaction network
"Bra006376" - AT5G16870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006376AT5G16870 (E=6e-027) | aminoacyl-tRNA hydrolase (78 aa)    
Predicted Functional Partners:
Bra014555
AT3G58730 (E=3e-050) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (202 aa)
       
      0.613
Bra007415
AT3G58730 (E=7e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
       
      0.613
Bra003352
AT3G58730 (E=9e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
       
      0.613
Bra035862
AT5G63070 (E=5e-061) | 40S ribosomal protein S15, putative (158 aa)
       
      0.612
Bra015299
AT1G04270 (E=1e-082) RPS15 | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (152 aa)
       
      0.612
Bra015299.1-P
AT1G04270 (E=1e-082) RPS15 | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (152 aa)
       
      0.612
Bra006024
AT5G09510 (E=2e-054) | 40S ribosomal protein S15 (RPS15D) (118 aa)
       
      0.612
Bra028346
AT5G47320 (E=1e-100) RPS19 | RPS19 (RIBOSOMAL PROTEIN S19); RNA binding (233 aa)
       
      0.536
Bra014985
AT5G47320 (E=2e-092) RPS19 | RPS19 (RIBOSOMAL PROTEIN S19); RNA binding (252 aa)
       
      0.536
Bra001922
AT5G47320 (E=7e-042) RPS19 | RPS19 (RIBOSOMAL PROTEIN S19); RNA binding (139 aa)
       
      0.536
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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