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Bra006379 protein (Brassica rapa) - STRING interaction network
"Bra006379" - AT5G16940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006379AT5G16940 (E=2e-071) | carbon-sulfur lyase (136 aa)    
Predicted Functional Partners:
Bra023590
AT5G16930 (E=4e-204) | AAA-type ATPase family protein (634 aa)
           
  0.606
Bra005719
AT5G02370 (E=3e-207) | kinesin motor protein-related (599 aa)
           
  0.541
Bra004885
AT2G45040 (E=2e-155) | matrix metalloproteinase (339 aa)
           
  0.541
Bra038649
AT5G63620 (E=3e-213) | oxidoreductase, zinc-binding dehydrogenase family protein (435 aa)
       
  0.531
Bra037749
AT5G63620 (E=7e-027) | oxidoreductase, zinc-binding dehydrogenase family protein (187 aa)
       
  0.531
Bra033706
AT5G43940 (E=4e-221) HOT5, ADH2, GSNOR | HOT5 (sensitive to hot temperatures 5); S-(hydroxymethyl)glutathione dehydrogenase/ S-nitrosoglutathione reductase (379 aa)
       
  0.531
Bra031390
AT1G22430 (E=5e-191) | alcohol dehydrogenase, putative (389 aa)
       
  0.531
Bra031208
AT1G64710 (E=1e-200) | alcohol dehydrogenase, putative (382 aa)
       
  0.531
Bra027516
AT5G43940 (E=9e-201) HOT5, ADH2, GSNOR | HOT5 (sensitive to hot temperatures 5); S-(hydroxymethyl)glutathione dehydrogenase/ S-nitrosoglutathione reductase (406 aa)
       
  0.531
Bra025081
AT5G42250 (E=1e-207) | alcohol dehydrogenase, putative (389 aa)
       
  0.531
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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