STRINGSTRING
Bra006405 protein (Brassica rapa) - STRING interaction network
"Bra006405" - AT5G17370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006405AT5G17370 (E=3e-021) | WD-40 repeat family protein (216 aa)    
Predicted Functional Partners:
Bra029577
AT4G05420 (E=0.0) DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (1086 aa)
       
      0.868
Bra020884
AT4G21100 (E=0.0) DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (1282 aa)
       
      0.868
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
       
 
  0.618
Bra000529
AT2G26990 (E=2e-233) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (439 aa)
       
 
  0.618
Bra026439
AT4G26430 (E=4e-152) CSN6B | CSN6B (318 aa)
       
      0.577
Bra023453
AT5G14250 (E=1e-180) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding (425 aa)
       
      0.577
Bra019106
AT4G26430 (E=7e-152) CSN6B | CSN6B (318 aa)
       
      0.577
Bra006326
AT5G14250 (E=3e-081) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding (250 aa)
       
      0.577
Bra006246
AT5G14250 (E=2e-184) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding (421 aa)
       
      0.577
Bra002827
AT5G56280 (E=3e-157) CSN6A | CSN6A (314 aa)
       
      0.577
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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