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Bra006407 protein (Brassica rapa) - STRING interaction network
"Bra006407" - AT5G17420 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006407AT5G17420 (E=0.0) IRX3, CESA7, ATCESA7, MUR10 | IRX3 (IRREGULAR XYLEM 3); cellulose synthase (1034 aa)    
Predicted Functional Partners:
Bra036929
AT1G43790 (E=1e-027) TED6 | TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6) (113 aa)
       
 
  0.924
Bra026355
AT4G27370 (E=0.0) VIIIB, ATVIIIB | VIIIB; motor (1244 aa)
   
  0.694
Bra040496
AT5G49720 (E=0.0) ATGH9A1, DEC, KOR, RSW2, IRX2, KOR1 | ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (621 aa)
     
 
  0.664
Bra000594
AT5G49720 (E=0.0) ATGH9A1, DEC, KOR, RSW2, IRX2, KOR1 | ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (621 aa)
     
 
  0.664
Bra017025
AT2G40180 (E=1e-129) ATHPP2C5 | ATHPP2C5; catalytic/ protein serine/threonine phosphatase (564 aa)
   
 
  0.641
Bra041099
Uncharacterized protein (698 aa)
         
  0.629
Bra006036
AT5G09870 (E=0.0) CESA5 | CESA5 (CELLULOSE SYNTHASE 5); cellulose synthase/ transferase, transferring glycosyl groups (1076 aa)
       
 
0.616
Bra036479
AT5G48920 (E=1e-030) TED7 | TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) (207 aa)
       
 
  0.603
Bra023631
AT5G17680 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1437 aa)
       
  0.583
Bra002963
AT5G54690 (E=1e-277) GAUT12, LGT6, IRX8 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (535 aa)
     
   
  0.573
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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