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Bra006413 protein (Brassica rapa) - STRING interaction network
"Bra006413" - AT5G17560 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006413AT5G17560 (E=4e-065) | BolA-like family protein (181 aa)    
Predicted Functional Partners:
Bra000810
AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)
   
 
  0.979
Bra029532
AT4G04950 (E=5e-091) | thioredoxin family protein (339 aa)
   
 
  0.966
Bra027220
AT3G15660 (E=3e-083) ATGRX4, GRX4 | GRX4 (GLUTAREDOXIN 4); metal ion binding (171 aa)
   
 
  0.943
Bra021125
AT3G15660 (E=4e-073) ATGRX4, GRX4 | GRX4 (GLUTAREDOXIN 4); metal ion binding (167 aa)
   
 
  0.943
Bra007110
AT3G54900 (E=5e-063) CXIP1, ATGRXCP | CXIP1 (CAX INTERACTING PROTEIN 1); antiporter/ glutathione disulfide oxidoreductase (174 aa)
   
 
  0.943
Bra003199
AT3G54900 (E=4e-066) CXIP1, ATGRXCP | CXIP1 (CAX INTERACTING PROTEIN 1); antiporter/ glutathione disulfide oxidoreductase (181 aa)
   
 
  0.943
Bra000047
AT2G38270 (E=3e-130) CXIP2, ATGRX2 | CXIP2 (CAX-INTERACTING PROTEIN 2); electron carrier/ protein disulfide oxidoreductase (294 aa)
   
 
  0.943
Bra009080
AT5G09830 (E=1e-029) | BolA-like family protein (92 aa)
     
 
  0.850
Bra037789
AT5G09830 (E=6e-037) | BolA-like family protein (98 aa)
     
 
  0.837
Bra006456
AT5G18400 (E=3e-104) | unknown protein ; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell (270 aa)
     
 
  0.638
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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