STRINGSTRING
Bra006417 protein (Brassica rapa) - STRING interaction network
"Bra006417" - AT5G17690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006417AT5G17690 (E=6e-021) TFL2, LHP1 | TFL2 (TERMINAL FLOWER 2); DNA binding / methylated histone residue binding (324 aa)    
Predicted Functional Partners:
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.959
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
       
  0.959
Bra032634
AT1G01370 (E=9e-048) HTR12, CENH3 | HTR12; DNA binding (241 aa)
       
  0.958
Bra037813
AT4G40030 (E=2e-017) | histone H3.2 (60 aa)
       
  0.958
Bra030763
AT1G09210 (E=2e-193) | calreticulin 2 (CRT2) (660 aa)
       
  0.958
Bra028589
AT5G44050 (E=1e-085) | MATE efflux family protein (415 aa)
       
  0.958
Bra006084
AT4G40030 (E=5e-028) | histone H3.2 (83 aa)
       
  0.958
Bra027449
AT4G40030 (E=2e-017) | histone H3.2 (72 aa)
       
  0.958
Bra020707
AT5G10400 (E=7e-018) | histone H3 (75 aa)
       
  0.958
Bra011813
AT4G40030 (E=4e-032) | histone H3.2 (116 aa)
       
  0.958
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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