STRINGSTRING
Bra006420 protein (Brassica rapa) - STRING interaction network
"Bra006420" - AT5G17790 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006420AT5G17790 (E=4e-251) VAR3 | VAR3 (VARIEGATED 3); binding / zinc ion binding (716 aa)    
Predicted Functional Partners:
Bra012496
AT1G24625 (E=7e-083) ZFP7 | ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding (213 aa)
       
      0.843
Bra010975
AT1G24625 (E=3e-090) ZFP7 | ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding (211 aa)
       
      0.843
Bra039628
AT2G18220 (E=4e-280) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0120 (InterPro-IPR005343); BEST Arabidopsis thaliana protein match is- RBL (REBELOTE) (TAIR-AT3G55510.1); Has 4846 Blast hits to 3236 proteins in 249 species- Archae - 2; Bacteria - 127; Metazoa - 2049; Fungi - 594; Plants - 200; Viruses - 69; Other Eukaryotes - 1805 (source- NCBI BLink). (761 aa)
     
        0.716
Bra007171
AT3G55510 (E=3e-211) RBL | RBL (REBELOTE) (628 aa)
     
        0.716
Bra004892
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (1259 aa)
     
        0.710
Bra000371
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (738 aa)
     
        0.710
Bra040681
AT2G19540 (E=1e-087) | transducin family protein / WD-40 repeat family protein (362 aa)
     
        0.632
Bra031087
AT2G19540 (E=3e-091) | transducin family protein / WD-40 repeat family protein (271 aa)
     
        0.632
Bra006708
AT2G19540 (E=4e-013) | transducin family protein / WD-40 repeat family protein (133 aa)
     
        0.632
Bra040838
AT4G27910 (E=2e-220) ATX4, SDG16 | SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding (932 aa)
       
      0.573
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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