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Bra006425 protein (Brassica rapa) - STRING interaction network
"Bra006425" - AT5G17870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006425AT5G17870 (E=6e-029) PSRP6 | PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) (113 aa)    
Predicted Functional Partners:
Bra014131
AT1G48350 (E=2e-087) | ribosomal protein L18 family protein (171 aa)
     
   
  0.633
Bra014663
AT3G56910 (E=2e-024) PSRP5 | PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (137 aa)
     
   
  0.576
Bra007282
AT3G56910 (E=1e-025) PSRP5 | PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (143 aa)
     
   
  0.576
Bra036763
AT1G35680 (E=2e-076) | 50S ribosomal protein L21, chloroplast / CL21 (RPL21) (203 aa)
     
   
  0.576
Bra005134
AT2G38140 (E=2e-030) PSRP4 | PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome (119 aa)
     
   
  0.524
Bra025534
AT5G40950 (E=4e-103) RPL27 | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome (198 aa)
     
   
  0.523
Bra022734
AT5G54600 (E=8e-085) | 50S ribosomal protein L24, chloroplast (CL24) (201 aa)
     
   
  0.514
Bra002973
AT5G54600 (E=4e-090) | 50S ribosomal protein L24, chloroplast (CL24) (199 aa)
     
   
  0.514
Bra023302
AT1G32990 (E=3e-087) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (219 aa)
     
   
  0.489
Bra021853
AT2G33450 (E=9e-064) | 50S ribosomal protein L28, chloroplast (CL28) (142 aa)
     
   
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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