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Bra006427 protein (Brassica rapa) - STRING interaction network
"Bra006427" - AT5G17900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006427AT5G17900 (E=9e-119) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- extracellular region; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G08580.1); Has 36643 Blast hits to 21191 proteins in 1090 species- Archae - 183; Bacteria - 2726; Metazoa - 17629; Fungi - 3036; Plants - 994; Viruses - 215; Other Eukaryotes - 11860 (source- NCBI BLink). (429 aa)    
Predicted Functional Partners:
Bra018163
AT3G47120 (E=2e-091) | RNA recognition motif (RRM)-containing protein (293 aa)
     
      0.985
Bra016978
AT2G40650 (E=5e-101) | pre-mRNA splicing factor PRP38 family protein (394 aa)
     
 
  0.954
Bra000198
AT2G40650 (E=5e-106) | pre-mRNA splicing factor PRP38 family protein (352 aa)
     
 
  0.954
Bra022288
AT3G18165 (E=1e-134) MOS4 | MOS4 (Modifier of snc1,4) (253 aa)
     
 
  0.946
Bra021297
AT3G18165 (E=4e-136) MOS4 | MOS4 (Modifier of snc1,4) (253 aa)
     
 
  0.946
Bra033870
AT1G31870 (E=5e-197) | unknown protein (548 aa)
     
      0.937
Bra029779
AT1G20920 (E=2e-226) | DEAD box RNA helicase, putative (887 aa)
     
      0.934
Bra035519
AT1G31910 (E=2e-228) | GHMP kinase family protein (502 aa)
       
      0.931
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
       
      0.931
Bra008595
AT5G16780 (E=2e-269) DOT2, MDF | DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2) (812 aa)
     
      0.929
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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