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Bra006439 protein (Brassica rapa) - STRING interaction network
"Bra006439" - AT5G18110 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006439AT5G18110 (E=4e-115) NCBP | NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor (218 aa)    
Predicted Functional Partners:
Bra020407
AT5G57870 (E=0.0) | eukaryotic translation initiation factor 4F, putative / eIF-4F, putative (770 aa)
     
  0.993
Bra011218
AT2G24050 (E=8e-107) | MIF4G domain-containing protein / MA3 domain-containing protein (547 aa)
     
  0.969
Bra010275
AT4G30770 (E=5e-060) | unknown protein (445 aa)
     
  0.969
Bra006457
AT5G18410 (E=0.0) PIR, KLK, PIR121, SRA1, PIRP | PIR121; transcription activator (1273 aa)
       
    0.902
Bra013145
AT2G13540 (E=0.0) ENS, ABH1, CBP80, ATCBP80 | ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding (845 aa)
       
 
  0.890
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
 
  0.835
Bra039841
AT4G34110 (E=1e-049) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor (213 aa)
       
  0.814
Bra039195
AT2G23350 (E=1e-243) PAB4, PABP4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (626 aa)
       
  0.814
Bra038203
AT1G49760 (E=3e-014) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (75 aa)
       
  0.814
Bra034603
AT4G34110 (E=4e-269) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (619 aa)
       
  0.814
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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