STRINGSTRING
Bra006443 protein (Brassica rapa) - STRING interaction network
"Bra006443" - AT3G03920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006443AT3G03920 (E=2e-050) | Gar1 RNA-binding region family protein (199 aa)    
Predicted Functional Partners:
Bra028669
AT5G08180 (E=3e-077) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (155 aa)
     
  0.993
Bra009327
AT5G08180 (E=1e-070) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (156 aa)
     
  0.993
Bra005975
AT5G08180 (E=7e-077) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (155 aa)
     
  0.993
Bra033149
AT3G57150 (E=6e-167) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
     
  0.990
Bra008756
AT5G14460 (E=2e-220) | pseudouridine synthase/ transporter (522 aa)
     
  0.990
Bra003270
AT3G57150 (E=2e-218) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
     
  0.990
Bra028311
AT5G52470 (E=2e-025) FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | FIB1 (FIBRILLARIN 1); snoRNA binding (189 aa)
   
 
  0.984
Bra022595
AT4G25630 (E=4e-118) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (291 aa)
   
 
  0.984
Bra019148
AT4G25630 (E=3e-129) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (307 aa)
   
 
  0.984
Bra013905
AT4G25630 (E=4e-127) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (310 aa)
   
 
  0.984
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]