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Bra006446 protein (Brassica rapa) - STRING interaction network
"Bra006446" - AT5G18230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006446AT5G18230 (E=0.0) | transcription regulator NOT2/NOT3/NOT5 family protein (845 aa)    
Predicted Functional Partners:
Bra030703
AT1G07705 (E=2e-066) | transcription regulator (444 aa)
     
  0.979
Bra019226
AT1G07700 (E=2e-070) | thioredoxin family protein (209 aa)
     
  0.979
Bra002540
AT5G59710 (E=3e-030) VIP2, AtVIP2 | VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (149 aa)
     
  0.979
Bra035152
AT1G80780 (E=6e-150) | CCR4-NOT transcription complex protein, putative (275 aa)
       
  0.971
Bra035002
AT3G44260 (E=2e-134) | CCR4-NOT transcription complex protein, putative (271 aa)
       
  0.971
Bra032421
AT1G06450 (E=2e-128) | CCR4-NOT transcription complex protein, putative (367 aa)
       
  0.971
Bra026093
AT1G15920 (E=2e-094) | CCR4-NOT transcription complex protein, putative (299 aa)
       
  0.971
Bra023214
AT1G27820 (E=2e-024) | CCR4-NOT transcription complex protein, putative (552 aa)
       
  0.971
Bra020179
AT5G22250 (E=5e-130) | CCR4-NOT transcription complex protein, putative (270 aa)
       
  0.971
Bra009001
AT5G10960 (E=4e-153) | CCR4-NOT transcription complex protein, putative (280 aa)
       
  0.971
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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