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Bra006457 protein (Brassica rapa) - STRING interaction network
"Bra006457" - AT5G18410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006457AT5G18410 (E=0.0) PIR, KLK, PIR121, SRA1, PIRP | PIR121; transcription activator (1273 aa)    
Predicted Functional Partners:
Bra005368
AT2G35110 (E=0.0) GRL, NAP1, NAPP | GRL (GNARLED); transcription activator (1399 aa)
     
  0.998
Bra030221
AT2G22640 (E=5e-029) HSPC300, BRK1 | BRK1 (BRICK1) (86 aa)
       
  0.988
Bra010847
AT1G29170 (E=7e-315) WAVE2, ATSCAR3, SCAR3 | WAVE2 (960 aa)
     
  0.971
Bra005450
AT2G34150 (E=8e-257) WAVE1 | WAVE1; actin monomer binding (888 aa)
     
  0.970
Bra013329
AT4G18600 (E=0.0) WAVE5, ATSCAR-LIKE, SCARL | WAVE5; protein binding (2291 aa)
     
  0.963
Bra021026
AT4G18040 (E=2e-107) EIF4E, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor (234 aa)
       
  0.912
Bra013283
AT4G18040 (E=5e-101) EIF4E, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor (228 aa)
       
  0.912
Bra023664
AT5G18110 (E=7e-116) NCBP | NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor (224 aa)
       
    0.902
Bra006439
AT5G18110 (E=4e-115) NCBP | NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor (218 aa)
       
    0.902
Bra039484
AT5G35620 (E=3e-094) LSP1, EIF(ISO)4E, LSP, EIF4E2 | LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine cap binding / RNA binding / translation initiation factor (198 aa)
       
  0.801
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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