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Bra006464 protein (Brassica rapa) - STRING interaction network
"Bra006464" - AT5G18520 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
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Cooccurence
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Experiments
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[Homology]
Score
Bra006464AT5G18520 (E=2e-193) | LOCATED IN- endomembrane system, integral to membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Transmembrane receptor, eukaryota (InterPro-IPR009637); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G09570.1); Has 385 Blast hits to 381 proteins in 83 species- Archae - 0; Bacteria - 2; Metazoa - 213; Fungi - 14; Plants - 131; Viruses - 0; Other Eukaryotes - 25 (source- NCBI BLink). (435 aa)    
Predicted Functional Partners:
Bra018988
AT1G52780 (E=0.0) | unknown protein (1055 aa)
           
  0.405
Bra005257
AT2G36630 (E=2e-187) | unknown protein (459 aa)
           
  0.405
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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