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Bra006486 protein (Brassica rapa) - STRING interaction network
"Bra006486" - AT3G25860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006486AT3G25860 (E=2e-019) LTA2, PLE2 | LTA2; dihydrolipoyllysine-residue acetyltransferase (305 aa)    
Predicted Functional Partners:
Bra035715
AT5G50850 (E=4e-182) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (453 aa)
   
  0.995
Bra032361.1-P
AT2G34590 (E=3e-169) | transketolase family protein (307 aa)
   
  0.995
Bra026451
AT5G50850 (E=2e-121) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (345 aa)
   
  0.995
Bra022757
AT5G50850 (E=2e-186) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (367 aa)
   
  0.995
Bra022529
AT5G50850 (E=2e-186) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (366 aa)
   
  0.995
Bra010796
AT1G30120 (E=9e-196) PDH-E1 BETA | PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) (403 aa)
   
  0.995
Bra036142
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (729 aa)
   
  0.992
Bra033540
AT4G16155 (E=4e-278) | dihydrolipoyl dehydrogenase (563 aa)
   
  0.990
Bra022204
AT3G17240 (E=2e-248) mtLPD2 | mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase (504 aa)
   
  0.990
Bra018700
AT1G48030 (E=2e-269) mtLPD1 | mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase (507 aa)
   
  0.990
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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