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Bra006496 protein (Brassica rapa) - STRING interaction network
"Bra006496" - AT5G19150 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006496AT5G19150 (E=2e-179) | carbohydrate kinase family (371 aa)    
Predicted Functional Partners:
Bra000603
AT5G49970 (E=2e-246) ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5’-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (455 aa)
   
 
  0.932
Bra038253
AT3G20060 (E=3e-097) UBC19 | UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase (181 aa)
     
      0.676
Bra035819
AT3G20060 (E=1e-098) UBC19 | UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase (181 aa)
     
      0.676
Bra030487
AT1G50490 (E=3e-092) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (174 aa)
     
      0.676
Bra018852
AT1G50490 (E=1e-098) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (181 aa)
     
      0.676
Bra014255
AT1G50490 (E=3e-061) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (164 aa)
     
      0.676
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
         
  0.574
Bra003809
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1380 aa)
         
  0.574
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
              0.554
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
              0.554
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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