STRINGSTRING
Bra006504 protein (Brassica rapa) - STRING interaction network
"Bra006504" - AT5G19420 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006504AT5G19420 (E=0.0) | Ran GTPase binding / chromatin binding / zinc ion binding (1103 aa)    
Predicted Functional Partners:
Bra021721
AT2G31650 (E=0.0) ATX1, SDG27 | ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (962 aa)
     
 
    0.862
Bra040432
AT3G63130 (E=2e-222) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (536 aa)
     
  0.702
Bra026911
AT5G19320 (E=8e-039) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (132 aa)
     
  0.702
Bra020788
AT3G06000 (E=3e-064) | leucine-rich repeat family protein (236 aa)
     
  0.702
Bra020034
AT5G19320 (E=1e-042) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (246 aa)
     
  0.702
Bra013834
AT3G63130 (E=1e-031) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (132 aa)
     
  0.702
Bra007730
AT3G63130 (E=1e-219) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (535 aa)
     
  0.702
Bra002227
AT5G19320 (E=5e-211) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (539 aa)
     
  0.702
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.692
Bra035562
AT5G55190 (E=9e-121) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.679
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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