STRINGSTRING
Bra006506 protein (Brassica rapa) - STRING interaction network
"Bra006506" - AT5G19473 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006506AT5G19473 (E=7e-038) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Defence response, Rin4 (InterPro-IPR008700); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G09960.1); Has 39 Blast hits to 39 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (95 aa)    
Predicted Functional Partners:
Bra038620
AT5G63270 (E=7e-031) | nitrate-responsive NOI protein, putative (75 aa)
     
   
  0.613
Bra037470
AT5G48657 (E=2e-068) | defense protein-related (219 aa)
           
  0.605
Bra037263
AT2G17660 (E=2e-034) | nitrate-responsive NOI protein, putative (69 aa)
           
  0.605
Bra036163
AT5G48657 (E=5e-080) | defense protein-related (215 aa)
           
  0.605
Bra029631
AT3G07200 (E=1e-046) | zinc finger (C3HC4-type RING finger) family protein (376 aa)
           
  0.605
Bra024499
AT2G17660 (E=2e-034) | nitrate-responsive NOI protein, putative (69 aa)
           
  0.605
Bra019544
AT3G48450 (E=3e-019) | nitrate-responsive NOI protein, putative (146 aa)
           
  0.605
Bra018058
AT3G48450 (E=2e-024) | nitrate-responsive NOI protein, putative (116 aa)
           
  0.605
Bra002076
AT2G17660 (E=3e-033) | nitrate-responsive NOI protein, putative (69 aa)
           
  0.605
Bra001241
AT3G07195 (E=1e-057) | proline-rich family protein (210 aa)
           
  0.605
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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