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Bra006525 protein (Brassica rapa) - STRING interaction network
"Bra006525" - AT5G19940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006525AT5G19940 (E=1e-076) | plastid-lipid associated protein PAP-related / fibrillin-related (212 aa)    
Predicted Functional Partners:
Bra040667
AT1G49660 (E=1e-140) AtCXE5 | AtCXE5 (Arabidopsis thaliana carboxyesterase 5); carboxylesterase (319 aa)
           
  0.449
Bra018807
AT1G49660 (E=8e-130) AtCXE5 | AtCXE5 (Arabidopsis thaliana carboxyesterase 5); carboxylesterase (326 aa)
           
  0.449
Bra036763
AT1G35680 (E=2e-076) | 50S ribosomal protein L21, chloroplast / CL21 (RPL21) (203 aa)
     
   
  0.412
Bra028884
AT2G26370 (E=2e-014) | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (153 aa)
           
  0.410
Bra011987
AT5G23820 (E=2e-017) | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (165 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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