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Bra006537 protein (Brassica rapa) - STRING interaction network
"Bra006537" - AT5G20070 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006537AT5G20070 (E=5e-092) ATNUDT19, ATNUDX19 | ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19); hydrolase/ metal ion binding (372 aa)    
Predicted Functional Partners:
Bra037978
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (742 aa)
     
 
  0.873
Bra030888
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (736 aa)
     
 
  0.873
Bra037601
AT5G22760 (E=0.0) | PHD finger family protein (1536 aa)
       
      0.621
Bra020213
AT5G22760 (E=0.0) | PHD finger family protein (1565 aa)
       
      0.621
Bra008890
AT5G12400 (E=9e-254) | PHD finger transcription factor, putative (1727 aa)
       
      0.621
Bra038355
AT1G68760 (E=3e-064) ATNUDT1, ATNUDX1 | ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1); dihydroneopterin triphosphate pyrophosphohydrolase/ hydrolase (144 aa)
         
  0.618
Bra039992
AT1G25490 (E=1e-062) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (133 aa)
       
      0.612
Bra035563
AT5G55220 (E=9e-245) | trigger factor type chaperone family protein (545 aa)
       
      0.612
Bra035030
AT1G25490 (E=2e-062) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (156 aa)
       
      0.612
Bra025162
AT3G25800 (E=3e-214) PDF1, PR 65, PP2AA2 | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (770 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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