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Bra006539 protein (Brassica rapa) - STRING interaction network
"Bra006539" - AT5G20090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006539AT5G20090 (E=1e-057) | unknown protein (111 aa)    
Predicted Functional Partners:
Bra029472
AT1G64590 (E=1e-060) | short-chain dehydrogenase/reductase (SDR) family protein (220 aa)
     
0.545
Bra013609
AT4G22310 (E=2e-050) | unknown protein (108 aa)
     
0.541
Bra019384
AT4G22310 (E=1e-054) | unknown protein (108 aa)
     
0.534
Bra013608
AT4G22310 (E=2e-055) | unknown protein (108 aa)
     
0.534
Bra035439
AT1G58380 (E=7e-124) XW6 | XW6; structural constituent of ribosome (280 aa)
     
   
  0.426
Bra037976
AT1G54220 (E=1e-240) | dihydrolipoamide S-acetyltransferase, putative ; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) (541 aa)
     
   
  0.415
Bra033446
AT3G52200 (E=1e-283) LTA3 | LTA3; ATP binding / dihydrolipoyllysine-residue acetyltransferase (641 aa)
     
   
  0.415
Bra028057
AT1G34430 (E=4e-165) EMB3003 | EMB3003 (embryo defective 3003); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase/ protein binding (455 aa)
     
   
  0.415
Bra027386
AT3G13930 (E=5e-120) | dihydrolipoamide S-acetyltransferase, putative ; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) (500 aa)
     
   
  0.415
Bra025167
AT3G25860 (E=5e-175) LTA2, PLE2 | LTA2; dihydrolipoyllysine-residue acetyltransferase (477 aa)
     
   
  0.415
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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