STRINGSTRING
Bra006546 protein (Brassica rapa) - STRING interaction network
"Bra006546" - AT5G20180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006546AT5G20180 (E=5e-047) | ribosomal protein L36 family protein (103 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.998
Bra000339
AT2G44060 (E=9e-153) | late embryogenesis abundant family protein / LEA family protein (777 aa)
   
  0.993
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.992
Bra037787
AT5G64650 (E=2e-068) | ribosomal protein L17 family protein (160 aa)
   
  0.992
Bra014830
AT3G54210 (E=4e-015) | ribosomal protein L17 family protein (113 aa)
   
  0.992
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
   
  0.992
Bra006032
AT5G09770 (E=1e-077) | ribosomal protein L17 family protein (159 aa)
   
  0.992
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
   
  0.992
Bra040982
ATCG00830 (E=9e-059) RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex (165 aa)
   
  0.992
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (17%) [HD]