STRINGSTRING
Bra006554 protein (Brassica rapa) - STRING interaction network
"Bra006554" - AT5G20310 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006554AT5G20310 (E=2e-124) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- sepal, flower, pollen tube; EXPRESSED DURING- 4 anthesis; BEST Arabidopsis thaliana protein match is- ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR-AT2G24370.1); Has 154 Blast hits to 153 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (383 aa)    
Predicted Functional Partners:
Bra018013
AT3G49060 (E=0.0) | protein kinase family protein / U-box domain-containing protein (803 aa)
         
  0.681
Bra019576
AT3G49060 (E=5e-273) | protein kinase family protein / U-box domain-containing protein (622 aa)
         
  0.657
Bra039305
AT2G45910 (E=0.0) | protein kinase family protein / U-box domain-containing protein (829 aa)
         
  0.644
Bra004947
AT2G45910 (E=2e-263) | protein kinase family protein / U-box domain-containing protein (801 aa)
         
  0.618
Bra008047
AT1G72760 (E=2e-164) | protein kinase family protein (392 aa)
         
  0.561
Bra021501
AT3G13690 (E=0.0) | protein kinase family protein (752 aa)
         
  0.555
Bra002791
AT5G56790 (E=0.0) | protein kinase family protein (1210 aa)
         
  0.555
Bra017931
AT1G21590 (E=0.0) | protein kinase family protein (747 aa)
         
  0.545
Bra031943
AT5G63940 (E=4e-195) | protein kinase family protein (686 aa)
         
  0.544
Bra014438
AT3G61410 (E=1e-071) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- protein kinase family protein / U-box domain-containing protein (TAIR-AT2G45910.1); Has 146 Blast hits to 144 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (278 aa)
           
  0.540
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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