STRINGSTRING
Bra006562 protein (Brassica rapa) - STRING interaction network
"Bra006562" - AT5G20510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006562AT5G20510 (E=9e-031) AL5 | AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding (70 aa)    
Predicted Functional Partners:
Bra023908
AT3G21060 (E=3e-262) | transducin family protein / WD-40 repeat family protein (547 aa)
       
 
  0.948
Bra018910
AT1G51450 (E=4e-139) | SPla/RYanodine receptor (SPRY) domain-containing protein (421 aa)
       
 
  0.948
Bra031808
AT5G66240 (E=4e-169) | transducin family protein / WD-40 repeat family protein (335 aa)
       
 
  0.922
Bra023473
AT5G14530 (E=6e-182) | transducin family protein / WD-40 repeat family protein (332 aa)
       
 
  0.922
Bra032450
AT1G05830 (E=1e-181) ATX2, SDG30 | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific) ; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recogn [...] (1088 aa)
     
 
  0.874
Bra040838
AT4G27910 (E=2e-220) ATX4, SDG16 | SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding (932 aa)
     
 
  0.871
Bra039562
AT4G15180 (E=0.0) SDG2, ATXR3 | SDG2 (SET DOMAIN-CONTAINING PROTEIN 2) (2386 aa)
     
 
  0.871
Bra037086
AT4G15180 (E=0.0) SDG2, ATXR3 | SDG2 (SET DOMAIN-CONTAINING PROTEIN 2) (2396 aa)
     
 
  0.871
Bra030627
AT1G05835 (E=1e-050) | unknown protein (228 aa)
     
 
  0.871
Bra027983
AT5G42400 (E=0.0) ATXR7, SDG25 | SDG25 (SET DOMAIN PROTEIN 25) (1297 aa)
     
 
  0.871
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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