STRINGSTRING
Bra006581 protein (Brassica rapa) - STRING interaction network
"Bra006581" - AT5G20870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006581AT5G20870 (E=2e-238) | glycosyl hydrolase family 17 protein (505 aa)    
Predicted Functional Partners:
Bra034288
AT2G25970 (E=5e-101) | KH domain-containing protein (628 aa)
           
  0.474
Bra035769
AT3G20570 (E=4e-063) | plastocyanin-like domain-containing protein (205 aa)
           
  0.450
Bra001794
AT3G20570 (E=1e-076) | plastocyanin-like domain-containing protein (204 aa)
           
  0.450
Bra007776
AT2G25970 (E=6e-092) | KH domain-containing protein (698 aa)
           
  0.444
Bra004214
AT1G67280 (E=3e-172) | lactoylglutathione lyase, putative / glyoxalase I, putative (341 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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