STRINGSTRING
Bra006586 protein (Brassica rapa) - STRING interaction network
"Bra006586" - AT5G20935 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006586AT5G20935 (E=6e-047) | unknown protein (117 aa)    
Predicted Functional Partners:
Bra040632
AT1G66740 (E=4e-090) AtSP7, SP7, SGA2, ASF1A | SGA2 (196 aa)
     
 
  0.953
Bra004186
AT1G66740 (E=1e-082) AtSP7, SP7, SGA2, ASF1A | SGA2 (199 aa)
     
 
  0.953
Bra022834
AT2G31270 (E=8e-121) ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding (551 aa)
       
      0.898
Bra018272
AT2G31270 (E=3e-207) ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding (587 aa)
       
      0.898
Bra014797
AT3G54710 (E=2e-095) ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase (460 aa)
       
      0.898
Bra014795
AT3G54710 (E=1e-063) ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase (352 aa)
       
      0.898
Bra018892
AT1G51100 (E=4e-075) | unknown protein (211 aa)
     
 
  0.637
Bra039333
AT2G45490 (E=5e-149) AtAUR3 | AtAUR3 (ATAURORA3); ATP binding / histone kinase(H3-S10 specific) / protein kinase (286 aa)
       
 
  0.576
Bra034536
AT4G32830 (E=5e-158) AtAUR1 | AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase (288 aa)
       
 
  0.576
Bra011386
AT4G32830 (E=1e-159) AtAUR1 | AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase (292 aa)
       
 
  0.576
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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