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Bra006587 protein (Brassica rapa) - STRING interaction network
"Bra006587" - AT5G20940 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006587AT5G20940 (E=6e-226) | glycosyl hydrolase family 3 protein (615 aa)    
Predicted Functional Partners:
Bra020472
AT5G24810 (E=0.0) | ABC1 family protein (999 aa)
       
  0.686
Bra009794
AT5G24810 (E=0.0) | ABC1 family protein (1032 aa)
       
  0.686
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
       
  0.608
Bra000737
AT4G11150 (E=2e-113) TUF, emb2448, TUFF, VHA-E1 | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism (431 aa)
       
  0.604
Bra020951
AT4G19810 (E=2e-185) | glycosyl hydrolase family 18 protein (380 aa)
       
  0.557
Bra013426
AT4G19810 (E=7e-139) | glycosyl hydrolase family 18 protein (269 aa)
       
  0.557
Bra000892
AT4G19750 (E=9e-133) | glycosyl hydrolase family 18 protein (362 aa)
       
  0.557
Bra032460
AT1G05590 (E=3e-287) HEXO2, ATHEX3 | HEXO2 (BETA-HEXOSAMINIDASE 2); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (582 aa)
   
 
  0.556
Bra014765
AT3G55260 (E=8e-291) HEXO1, ATHEX2 | HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (550 aa)
   
 
  0.556
Bra004121
AT1G65590 (E=6e-265) HEXO3, ATHEX1 | HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase (534 aa)
   
 
  0.556
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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