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Bra006589 protein (Brassica rapa) - STRING interaction network
"Bra006589" - AT5G20980 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006589AT5G20980 (E=0.0) ATMS3 | ATMS3 (methionine synthase 3); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (815 aa)    
Predicted Functional Partners:
Bra032750
AT4G13940 (E=4e-261) HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding (485 aa)
     
 
  0.961
Bra028345
AT3G23810 (E=6e-260) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
     
 
  0.961
Bra014984
AT3G23810 (E=4e-271) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
     
 
  0.961
Bra001921
AT3G23810 (E=1e-272) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
     
 
  0.961
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
         
  0.956
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
         
  0.956
Bra014002
AT4G13940 (E=3e-253) HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding (478 aa)
     
 
  0.955
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
   
 
  0.936
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
   
 
  0.936
Bra011405
AT4G33010 (E=0.0) AtGLDP1 | AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (decarboxylating)/ pyridoxal phosphate binding (1045 aa)
   
 
  0.935
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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