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Bra006597 protein (Brassica rapa) - STRING interaction network
"Bra006597" - AT5G21920 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006597AT5G21920 (E=3e-116) | YGGT family protein (251 aa)    
Predicted Functional Partners:
Bra039488
AT5G36120 (E=2e-067) CCB3 | CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (180 aa)
   
   
  0.637
Bra009004
AT5G10920 (E=1e-258) | argininosuccinate lyase, putative / arginosuccinase, putative (940 aa)
         
  0.534
Bra026396
AT4G26860 (E=1e-122) | pyridoxal phosphate binding (244 aa)
   
   
  0.503
Bra016803
AT1G11930 (E=2e-131) | alanine racemase family protein (263 aa)
   
   
  0.503
Bra039115
AT3G01480 (E=7e-188) CYP38 | CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase (428 aa)
   
        0.493
Bra037199
AT2G11810 (E=3e-230) MGDC, MGD3, ATMGD3 | MGDC; 1,2-diacylglycerol 3-beta-galactosyltransferase (469 aa)
         
  0.476
Bra023984
AT4G31780 (E=1e-261) MGD1, MGDA | MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1); 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups (532 aa)
         
  0.476
Bra020104
AT5G20410 (E=8e-255) MGD2, ATMGD2 | MGD2; 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ transferase, transferring glycosyl groups (473 aa)
         
  0.476
Bra015969
AT1G73740 (E=5e-199) | glycosyl transferase family 28 protein (432 aa)
         
  0.476
Bra011297
AT4G31780 (E=8e-253) MGD1, MGDA | MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1); 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups (527 aa)
         
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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