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Bra006602 protein (Brassica rapa) - STRING interaction network
"Bra006602" - AT5G21990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006602AT5G21990 (E=3e-248) | tetratricopeptide repeat (TPR)-containing protein (555 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.991
Bra040123
AT3G04710 (E=3e-205) | ankyrin repeat family protein (594 aa)
   
 
  0.982
Bra001120
AT3G04710 (E=2e-210) | ankyrin repeat family protein (456 aa)
   
 
  0.982
Bra016929
AT2G41500 (E=4e-240) LIS, EMB2776 | EMB2776; nucleotide binding (545 aa)
       
  0.953
Bra004625
AT2G41500 (E=1e-209) LIS, EMB2776 | EMB2776; nucleotide binding (489 aa)
       
  0.953
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
    0.926
Bra030557
AT1G04190 (E=1e-167) | tetratricopeptide repeat (TPR)-containing protein (331 aa)
     
 
  0.920
Bra036648
AT4G12400 (E=2e-216) | stress-inducible protein, putative (553 aa)
     
 
  0.918
Bra027022
AT1G62740 (E=4e-271) | stress-inducible protein, putative (567 aa)
     
 
  0.918
Bra026980
AT1G12270 (E=1e-137) | stress-inducible protein, putative (455 aa)
     
 
  0.918
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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