STRINGSTRING
Bra006615 protein (Brassica rapa) - STRING interaction network
"Bra006615" - AT5G22220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006615AT5G22220 (E=7e-192) E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor (463 aa)    
Predicted Functional Partners:
Bra009586
AT5G02470 (E=2e-129) DPA | DPA; transcription factor (290 aa)
     
  0.996
Bra038707
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1019 aa)
     
  0.991
Bra034764
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1016 aa)
     
  0.991
Bra005763
AT5G03415 (E=2e-129) DPB, ATDPB | DPB; protein binding / protein heterodimerization (365 aa)
     
  0.982
Bra005726
AT5G02470 (E=4e-127) DPA | DPA; transcription factor (283 aa)
     
  0.982
Bra001446
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1027 aa)
     
  0.979
Bra019207
AT4G24820 (E=5e-208) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
      0.952
Bra013838
AT4G24820 (E=8e-209) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
      0.952
Bra040393
AT3G04620 (E=1e-060) | nucleic acid binding (152 aa)
       
      0.952
Bra001110
AT3G04620 (E=2e-057) | nucleic acid binding (164 aa)
       
      0.952
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]