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Bra006621 protein (Brassica rapa) - STRING interaction network
"Bra006621" - AT5G22330 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006621AT5G22330 (E=2e-240) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)    
Predicted Functional Partners:
Bra037834
AT5G67630 (E=8e-034) | DNA helicase, putative (93 aa)
     
  0.991
Bra024433
AT5G67630 (E=8e-236) | DNA helicase, putative (466 aa)
   
0.985
Bra014632
AT3G57300 (E=0.0) INO80, ATINO80 | INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid binding (1514 aa)
     
  0.975
Bra007318
AT3G57300 (E=0.0) INO80, ATINO80 | INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid binding (1496 aa)
     
  0.975
Bra021391
AT2G47210 (E=5e-146) | myb family transcription factor (406 aa)
     
  0.968
Bra004471
AT2G47210 (E=5e-099) | myb family transcription factor (432 aa)
     
  0.968
Bra034758
AT3G12380 (E=1e-073) ATARP5 | ATARP5 (ACTIN-RELATED PROTEIN 5); structural constituent of cytoskeleton (412 aa)
     
  0.958
Bra035982
AT5G43500 (E=2e-198) ATARP9 | ATARP9 (ACTIN-RELATED PROTEIN 9); DNA binding / protein binding (565 aa)
       
  0.956
Bra008401
AT1G79190 (E=0.0) | binding (1316 aa)
       
 
  0.950
Bra039907
AT2G18000 (E=4e-075) TAF14 | TAF14 (TBP-associated factor 14) (258 aa)
     
  0.944
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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