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Bra006627 protein (Brassica rapa) - STRING interaction network
"Bra006627" - AT5G22460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006627AT5G22460 (E=2e-162) | esterase/lipase/thioesterase family protein (342 aa)    
Predicted Functional Partners:
Bra025818
AT1G21860 (E=4e-252) sks7 | sks7 (SKU5 Similar 7); copper ion binding / oxidoreductase (551 aa)
           
  0.607
Bra018466
AT1G10030 (E=7e-059) ERG28 | ERG28 (Arabidopsis homolog of yeast ergosterol28) (129 aa)
           
  0.478
Bra015781
AT1G76160 (E=1e-300) sks5 | sks5 (SKU5 Similar 5); copper ion binding / oxidoreductase (541 aa)
           
  0.472
Bra013582
AT4G22010 (E=4e-312) sks4 | sks4 (SKU5 Similar 4); copper ion binding / oxidoreductase (541 aa)
           
  0.472
Bra040323
AT2G45140 (E=4e-108) PVA12 | PVA12 (PLANT VAP HOMOLOG 12); structural molecule (239 aa)
           
  0.418
Bra012363
AT1G23130 (E=2e-054) | Bet v I allergen family protein (161 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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