STRINGSTRING
Bra006632 protein (Brassica rapa) - STRING interaction network
"Bra006632" - AT5G22730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006632AT5G22730 (E=2e-086) | F-box family protein (453 aa)    
Predicted Functional Partners:
Bra016200
AT1G70590 (E=5e-156) | F-box family protein (346 aa)
           
  0.461
Bra034004
AT1G67340 (E=7e-157) | zinc finger (MYND type) family protein / F-box family protein (377 aa)
           
  0.457
Bra004220
AT1G67340 (E=2e-176) | zinc finger (MYND type) family protein / F-box family protein (372 aa)
           
  0.457
Bra001142
AT3G16740 (E=4e-121) | F-box family protein (389 aa)
           
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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