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Bra006648 protein (Brassica rapa) - STRING interaction network
"Bra006648" - AT5G60790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006648AT5G60790 (E=1e-290) ATGCN1, GCN1 | ATGCN1; transporter (605 aa)    
Predicted Functional Partners:
Bra002185
AT3G06320 (E=1e-027) | ribosomal protein L33 family protein (58 aa)
     
      0.895
Bra002185.1-P
AT3G06320 (E=1e-027) | ribosomal protein L33 family protein (58 aa)
     
      0.895
Bra031113
AT1G76810 (E=2e-055) | eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (454 aa)
     
 
  0.798
Bra008506
AT1G64790 (E=0.0) | binding (2613 aa)
     
 
  0.770
Bra032841
AT1G27680 (E=2e-041) APL2 | APL2 (ADPGLC-PPASE LARGE SUBUNIT); glucose-1-phosphate adenylyltransferase (456 aa)
     
 
  0.671
Bra021494
AT3G13640 (E=4e-313) ATRLI1 | ATRLI1; transporter (603 aa)
     
 
  0.671
Bra020966
AT4G19210 (E=0.0) ATRLI2, RLI2 | ATRLI2; transporter (605 aa)
     
 
  0.671
Bra017243
AT3G13640 (E=6e-045) ATRLI1 | ATRLI1; transporter (757 aa)
     
 
  0.671
Bra013385
AT4G19210 (E=3e-223) ATRLI2, RLI2 | ATRLI2; transporter (581 aa)
     
 
  0.671
Bra012553
AT4G19210 (E=0.0) ATRLI2, RLI2 | ATRLI2; transporter (605 aa)
     
 
  0.671
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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