STRINGSTRING
Bra006661 protein (Brassica rapa) - STRING interaction network
"Bra006661" - AT5G60390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006661AT5G60390 (E=1e-251) | elongation factor 1-alpha / EF-1-alpha ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (449 aa)    
Predicted Functional Partners:
Bra031676
AT1G09640 (E=9e-204) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
     
  0.999
Bra030790
AT1G57720 (E=6e-190) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (566 aa)
     
  0.999
Bra020005
AT1G09640 (E=4e-193) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
     
  0.999
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
  0.990
Bra038589
AT1G61580 (E=2e-198) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (389 aa)
     
  0.982
Bra035298
AT1G43170 (E=8e-210) ARP1, RPL3A | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome (391 aa)
     
  0.982
Bra031423
AT1G61580 (E=1e-198) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (389 aa)
     
  0.982
Bra027986
AT1G43170 (E=9e-117) ARP1, RPL3A | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome (355 aa)
     
  0.982
Bra027830
AT1G61580 (E=3e-065) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (218 aa)
     
  0.982
Bra024986
AT1G43170 (E=1e-209) ARP1, RPL3A | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome (391 aa)
     
  0.982
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]