STRINGSTRING
Bra006662 protein (Brassica rapa) - STRING interaction network
"Bra006662" - AT1G01210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006662AT1G01210 (E=1e-041) | DNA-directed RNA polymerase III family protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (103 aa)    
Predicted Functional Partners:
Bra039985
AT2G29540 (E=2e-025) ATRPC14, ATRPAC14 | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization (96 aa)
   
  0.985
Bra018380
AT2G29540 (E=3e-043) ATRPC14, ATRPAC14 | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization (129 aa)
   
  0.985
Bra025090
AT5G45140 (E=0.0) NRPC2 | NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1158 aa)
     
  0.984
Bra007463
AT3G59600 (E=7e-078) NRPB8B, NRPD8B, NRPE8B | NRPB8B; DNA-directed RNA polymerase (146 aa)
     
  0.981
Bra026486
AT5G23710 (E=1e-049) | DNA binding / DNA-directed RNA polymerase (196 aa)
     
  0.978
Bra009704
AT5G23710 (E=8e-083) | DNA binding / DNA-directed RNA polymerase (233 aa)
     
  0.978
Bra035872
AT5G62950 (E=9e-038) | catalytic/ nucleotide binding (129 aa)
     
  0.977
Bra029237
AT5G62950 (E=3e-049) | catalytic/ nucleotide binding (149 aa)
     
  0.977
Bra039057
AT5G51940 (E=1e-057) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
     
  0.976
Bra025617
AT5G51940 (E=2e-065) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
     
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]