STRINGSTRING
Bra006672 protein (Brassica rapa) - STRING interaction network
"Bra006672" - AT5G60230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006672AT5G60230 (E=1e-123) SEN2, ATSEN2 | SEN2 (splicing endonuclease 2); nuclease/ tRNA-intron endonuclease (249 aa)    
Predicted Functional Partners:
Bra014631
AT3G57360 (E=5e-057) | unknown protein (242 aa)
       
  0.948
Bra007322
AT3G57360 (E=2e-113) | unknown protein (254 aa)
       
  0.948
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
              0.557
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
              0.557
Bra040132
AT3G04600 (E=3e-205) | tRNA synthetase class I (W and Y) family protein (401 aa)
         
  0.464
Bra040117
AT3G05040 (E=6e-212) HST, HST1 | HST (HASTY); nucleocytoplasmic transporter (1500 aa)
         
  0.464
Bra034277
AT2G25840 (E=1e-168) OVA4 | OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase (395 aa)
         
  0.464
Bra029108
AT2G25840 (E=1e-159) OVA4 | OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase (411 aa)
         
  0.464
Bra028092
AT3G04600 (E=3e-177) | tRNA synthetase class I (W and Y) family protein (441 aa)
         
  0.464
Bra001114
AT3G04600 (E=8e-205) | tRNA synthetase class I (W and Y) family protein (505 aa)
         
  0.464
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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