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Bra006675 protein (Brassica rapa) - STRING interaction network
"Bra006675" - AT5G60200 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006675AT5G60200 (E=1e-120) | Dof-type zinc finger domain-containing protein (277 aa)    
Predicted Functional Partners:
Bra006583
AT5G20885 (E=2e-076) | zinc finger (C3HC4-type RING finger) family protein (167 aa)
           
  0.448
Bra006583.1-P
AT5G20885 (E=2e-076) | zinc finger (C3HC4-type RING finger) family protein (167 aa)
           
  0.448
Bra035872
AT5G62950 (E=9e-038) | catalytic/ nucleotide binding (129 aa)
           
  0.410
Bra029237
AT5G62950 (E=3e-049) | catalytic/ nucleotide binding (149 aa)
           
  0.410
Bra030807
AT1G54330 (E=2e-121) ANAC020 | ANAC020 (Arabidopsis NAC domain containing protein 20); transcription factor (309 aa)
     
   
  0.410
Bra040113
AT3G05150 (E=2e-252) | sugar transporter family protein (472 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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