STRINGSTRING
Bra006676 protein (Brassica rapa) - STRING interaction network
"Bra006676" - AT5G60190 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006676AT5G60190 (E=2e-095) | Ulp1 protease family protein (225 aa)    
Predicted Functional Partners:
Bra037281
AT2G17200 (E=4e-207) | ubiquitin family protein (542 aa)
       
  0.746
Bra036232
AT4G05230 (E=3e-060) | ubiquitin family protein (201 aa)
       
  0.746
Bra036231
AT4G05230 (E=1e-013) | ubiquitin family protein (444 aa)
       
  0.746
Bra036230
AT4G03370 (E=5e-016) | ubiquitin family protein (538 aa)
       
  0.746
Bra034606
AT4G05230 (E=7e-079) | ubiquitin family protein (208 aa)
       
  0.746
Bra033420
AT5G03240 (E=8e-030) UBQ3 (71 aa)
       
  0.746
Bra029570.1-P
AT4G02890 (E=7e-082) UBQ14 | UBQ14; protein binding ; Ubiquitin- exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-48- [...] (153 aa)
       
  0.746
Bra029569
AT4G05230 (E=8e-081) | ubiquitin family protein (206 aa)
       
  0.746
Bra028408
AT5G38470 (E=1e-140) | DNA repair protein RAD23, putative (382 aa)
       
  0.746
Bra028184
AT5G38470 (E=1e-134) | DNA repair protein RAD23, putative (378 aa)
       
  0.746
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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