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Bra006678 protein (Brassica rapa) - STRING interaction network
"Bra006678" - AT5G60180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006678AT5G60180 (E=3e-102) APUM19 | APUM19 (Arabidopsis Pumilio 19); RNA binding / binding (317 aa)    
Predicted Functional Partners:
Bra040286
AT3G06700 (E=4e-030) | 60S ribosomal protein L29 (RPL29A) (61 aa)
       
      0.612
Bra029600
AT3G06700 (E=5e-030) | 60S ribosomal protein L29 (RPL29A) (61 aa)
       
      0.612
Bra001213
AT3G06680 (E=1e-030) | 60S ribosomal protein L29 (RPL29B) (193 aa)
       
      0.612
Bra035152
AT1G80780 (E=6e-150) | CCR4-NOT transcription complex protein, putative (275 aa)
       
 
  0.601
Bra035002
AT3G44260 (E=2e-134) | CCR4-NOT transcription complex protein, putative (271 aa)
       
 
  0.601
Bra032421
AT1G06450 (E=2e-128) | CCR4-NOT transcription complex protein, putative (367 aa)
       
 
  0.601
Bra026093
AT1G15920 (E=2e-094) | CCR4-NOT transcription complex protein, putative (299 aa)
       
 
  0.601
Bra023214
AT1G27820 (E=2e-024) | CCR4-NOT transcription complex protein, putative (552 aa)
       
 
  0.601
Bra020179
AT5G22250 (E=5e-130) | CCR4-NOT transcription complex protein, putative (270 aa)
       
 
  0.601
Bra009001
AT5G10960 (E=4e-153) | CCR4-NOT transcription complex protein, putative (280 aa)
       
 
  0.601
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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