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Bra006685 protein (Brassica rapa) - STRING interaction network
"Bra006685" - AT5G22880 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006685AT5G22880 (E=2e-046) H2B, HTB2 | HTB2; DNA binding ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (141 aa)    
Predicted Functional Partners:
Bra036619
AT5G27670 (E=7e-042) HTA7 | HTA7 (HISTONE H2A 7); DNA binding (151 aa)
     
  0.998
Bra035755
AT3G20670 (E=2e-053) HTA13 | HTA13; DNA binding (133 aa)
     
  0.998
Bra031646
AT1G54690 (E=8e-042) HTA3, H2AXB, G-H2AX, GAMMA-H2AX | GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding (142 aa)
     
  0.998
Bra030745
AT1G54690 (E=6e-053) HTA3, H2AXB, G-H2AX, GAMMA-H2AX | GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding (142 aa)
     
  0.998
Bra030460
AT1G51060 (E=1e-054) HTA10 | HTA10; DNA binding (133 aa)
     
  0.998
Bra029498
AT1G51060 (E=6e-018) HTA10 | HTA10; DNA binding (120 aa)
     
  0.998
Bra028869
AT5G02560 (E=2e-039) HTA12 | HTA12; DNA binding (152 aa)
     
  0.998
Bra026367
AT4G27230 (E=1e-046) HTA2 | HTA2 (histone H2A); DNA binding (132 aa)
     
  0.998
Bra023937
AT3G20670 (E=1e-054) HTA13 | HTA13; DNA binding (134 aa)
     
  0.998
Bra020581
AT5G27670 (E=7e-031) HTA7 | HTA7 (HISTONE H2A 7); DNA binding (149 aa)
     
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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