STRINGSTRING
Bra006689 protein (Brassica rapa) - STRING interaction network
"Bra006689" - AT1G07770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006689AT1G07770 (E=8e-070) RPS15A | RPS15A (ribosomal protein s15a); structural constituent of ribosome (247 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra041145
ATCG01240 (E=2e-067) RPS7.2 | 30S chloroplast ribosomal protein S7 (156 aa)
   
  0.999
Bra034799
AT3G11940 (E=9e-109) ATRPS5A, AML1 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome (207 aa)
   
  0.999
Bra034799.1-P
AT3G11940 (E=9e-109) ATRPS5A, AML1 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome (207 aa)
   
  0.999
Bra023113
AT2G37270 (E=5e-110) ATRPS5B | ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome (387 aa)
   
  0.999
Bra017199
AT2G37270 (E=1e-110) ATRPS5B | ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome (207 aa)
   
  0.999
Bra005209.1-P
AT2G37270 (E=2e-110) ATRPS5B | ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome (207 aa)
   
  0.999
Bra001428
AT3G11940 (E=4e-108) ATRPS5A, AML1 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome (207 aa)
   
  0.999
Bra040853
AT5G39850 (E=2e-093) | 40S ribosomal protein S9 (RPS9C) (197 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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