STRINGSTRING
Bra006698 protein (Brassica rapa) - STRING interaction network
"Bra006698" - AT5G59710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006698AT5G59710 (E=9e-256) VIP2, AtVIP2 | VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (609 aa)    
Predicted Functional Partners:
Bra023668
AT5G18230 (E=3e-041) | transcription regulator NOT2/NOT3/NOT5 family protein (340 aa)
     
  0.979
Bra006447
AT5G18230 (E=8e-232) | transcription regulator NOT2/NOT3/NOT5 family protein (536 aa)
     
  0.979
Bra037308
AT1G02080 (E=1e-193) | transcriptional regulator-related (1369 aa)
     
  0.979
Bra033222
AT1G02080 (E=0.0) | transcriptional regulator-related (2419 aa)
     
  0.979
Bra032664
AT1G02080 (E=0.0) | transcriptional regulator-related (2295 aa)
     
  0.979
Bra028531
AT1G02080 (E=0.0) | transcriptional regulator-related (2333 aa)
     
  0.979
Bra027361
AT1G02080 (E=1e-007) | transcriptional regulator-related (76 aa)
     
  0.979
Bra021787
AT1G02080 (E=1e-077) | transcriptional regulator-related (239 aa)
     
  0.979
Bra002144
AT5G18230 (E=0.0) | transcription regulator NOT2/NOT3/NOT5 family protein (834 aa)
     
0.968
Bra006446
AT5G18230 (E=0.0) | transcription regulator NOT2/NOT3/NOT5 family protein (845 aa)
     
0.968
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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