STRINGSTRING
Bra002547 protein (Brassica rapa) - STRING interaction network
"Bra002547" - AT3G46430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002547AT3G46430 (E=2e-028) | unknown protein (55 aa)    
Predicted Functional Partners:
Bra016973
AT2G40760 (E=2e-187) | rhodanese-like domain-containing protein (383 aa)
           
  0.522
Bra034149
AT3G10860 (E=4e-037) | ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative (72 aa)
     
   
  0.509
Bra019652
AT3G52730 (E=6e-021) | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein (76 aa)
     
   
  0.506
Bra009109
AT5G05370 (E=5e-035) | ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative (72 aa)
     
   
  0.495
Bra005851
AT5G05370 (E=3e-035) | ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative (72 aa)
     
   
  0.495
Bra030405
AT1G51980 (E=7e-238) | mitochondrial processing peptidase alpha subunit, putative (504 aa)
           
  0.483
Bra029928
AT5G23740 (E=1e-075) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
           
  0.483
Bra029381
AT5G23740 (E=2e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
           
  0.483
Bra026484
AT5G23740 (E=7e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
           
  0.483
Bra016121
AT1G71740 (E=4e-053) | unknown protein (133 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]