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Bra006723 protein (Brassica rapa) - STRING interaction network
"Bra006723" - AT1G35440 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006723AT1G35440 (E=1e-090) CYCT1;1 | CYCT1;1 (CYCLIN T1;1); cyclin-dependent protein kinase (264 aa)    
Predicted Functional Partners:
Bra031013
AT1G18040 (E=2e-201) CDKD1;3, AT;CDCKD;3, CAK2AT | CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase (377 aa)
     
  0.974
Bra016572
AT1G18040 (E=2e-208) CDKD1;3, AT;CDCKD;3, CAK2AT | CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase (393 aa)
     
  0.974
Bra015974
AT1G73690 (E=1e-198) CDKD1;1, AT;CDKD;1, CAK3AT | CDKD1;1 (CYCLIN-DEPENDENT KINASE D1;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (397 aa)
     
  0.974
Bra037748
AT5G63610 (E=1e-234) HEN3, CDKE;1, ATCDK8 | CDKE;1 (CYCLIN-DEPENDENT KINASE E;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (468 aa)
     
  0.965
Bra024041
AT4G30820 (E=3e-067) | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (185 aa)
       
  0.955
Bra010271
AT4G30820 (E=1e-067) | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (182 aa)
       
  0.955
Bra035499
AT1G32750 (E=0.0) HAF01, HAF1, HAC13, GTD1, TAF1 | HAF01; DNA binding / histone acetyltransferase (1893 aa)
     
  0.939
Bra032544
AT1G03750 (E=0.0) CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding (1643 aa)
     
  0.935
Bra041128
AT3G01085 (E=9e-202) | protein kinase family protein (534 aa)
     
  0.933
Bra040637
AT3G05050 (E=7e-251) | protein kinase family protein (578 aa)
     
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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