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Bra006725 protein (Brassica rapa) - STRING interaction network
"Bra006725" - AT5G59040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006725AT5G59040 (E=5e-053) COPT3 | COPT3; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (150 aa)    
Predicted Functional Partners:
Bra022226
AT3G17611 (E=1e-125) ATRBL14 | ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding (331 aa)
       
      0.542
Bra021259
AT3G17611 (E=4e-138) ATRBL14 | ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding (559 aa)
       
      0.542
Bra007456
AT3G59520 (E=6e-104) ATRBL13 | ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13) (199 aa)
       
      0.542
Bra007394
AT3G58460 (E=3e-203) ATRBL15 | ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) (417 aa)
       
      0.542
Bra040643
AT3G05220 (E=1e-035) | heavy-metal-associated domain-containing protein (556 aa)
     
   
  0.520
Bra040245
AT3G05920 (E=5e-031) | heavy-metal-associated domain-containing protein (142 aa)
     
   
  0.520
Bra039452
AT3G05220 (E=4e-039) | heavy-metal-associated domain-containing protein (606 aa)
     
   
  0.520
Bra039371
AT3G13140 (E=4e-027) | hydroxyproline-rich glycoprotein family protein (187 aa)
     
   
  0.520
Bra038642
AT5G63530 (E=1e-058) ATFP3, FP3 | ATFP3; metal ion binding / transition metal ion binding (291 aa)
     
   
  0.520
Bra037919
AT4G10465 (E=2e-081) | metal ion binding (182 aa)
     
   
  0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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