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Bra006730 protein (Brassica rapa) - STRING interaction network
"Bra006730" - AT5G59140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006730AT5G59140 (E=1e-050) | SKP1 family protein (96 aa)    
Predicted Functional Partners:
Bra020408
AT5G57860 (E=2e-033) | ubiquitin family protein (152 aa)
     
  0.983
Bra006794
AT5G57860 (E=3e-041) | ubiquitin family protein (93 aa)
     
  0.983
Bra000274
AT2G42780 (E=7e-103) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of transcription; LOCATED IN- integral to membrane, nucleus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- RNA polymerase II transcription factor SIII, subunit A (InterPro-IPR010684); Has 143 Blast hits to 142 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 19; Plants - 18; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (406 aa)
       
  0.976
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
     
  0.964
Bra034597
AT4G02570 (E=7e-295) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (731 aa)
       
  0.962
Bra033363
AT4G02570 (E=7e-264) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (778 aa)
       
  0.962
Bra033362
AT4G02570 (E=1e-256) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (716 aa)
       
  0.962
Bra032576
AT4G02570 (E=6e-295) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (738 aa)
       
  0.962
Bra032570
AT4G02570 (E=9e-090) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (696 aa)
       
  0.962
Bra028442
AT4G02570 (E=3e-164) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (703 aa)
       
  0.962
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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